PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094332.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 276aa    MW: 30512.5 Da    PI: 9.1175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094332.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-063052123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp+Cgk Fs++  L  H++ H
  XP_010094332.1 30 FECPYCGKDFSSSQALGGHQNAH 52
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-62456IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.98E-72657No hitNo description
PfamPF139121.4E-72954IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.0483057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKLFGFSVPC SHKVINGSGN DLDHQNKQRF ECPYCGKDFS SSQALGGHQN AHKAERKLAK  60
TAQTRRSNPP PPDHSPPPPP HHYHNQEAFV VGVPMIISAH HAVIRPSGPS AVHSGGPRCI  120
IRPVARFERV SPWPVSAAAA HPRYAVNVGS SESSNIIHYG PIRARRVSSR HVGDVTGADR  180
VVSGARSAPY ATVMGQGSEG DHDHDHPPHR YGLEEEWQVS WGNWYQRCRL DCFRWCENGM  240
LLVDMWCKSI VRVVFPSVSS VVVVLLLQGS TQIPFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094332.10.0Zinc finger protein 6
TrEMBLW9R4030.0W9R403_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-11C2H2 family protein